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[error] SIGSEGV: Illegal storage access. (Attempt to read from nil?) Segmentation fault (core dumped) (

Open egenomics opened this issue 1 year ago • 14 comments

Hi, I am getting an error in the last step of ancestry calling, after succesfully generating all the .somalier query files and downloading the relevant ancestry-labels-1kg.tsv file and 1kg.somalier/.somalier files.

Here is the code that we have tested in two different machines with the same error

(base) jlvillanueva@EEP10709:~/Downloads/somalier_aina$ ll
total 117916
drwxrwxr-x  4 jlvillanueva jlvillanueva     4096 Dec 18 15:45 ./
drwxr-xr-x 54 jlvillanueva jlvillanueva    40960 Dec 18 16:06 ../
drwxrwxr-x  3 jlvillanueva jlvillanueva     4096 Dec 18 15:44 1kg.somalier/
-rw-rw-r--  1 jlvillanueva jlvillanueva 82856769 Dec 18 15:44 1kg.somalier.tar.gz
-rw-rw-r--  1 jlvillanueva jlvillanueva    56028 Dec 18 15:44 ancestry-labels-1kg.tsv
drwxrwxr-x  2 jlvillanueva jlvillanueva     4096 Dec 18 15:09 cohort/
-rw-rw-r--  1 jlvillanueva jlvillanueva   265818 Dec 18 15:44 sites.hg38.vcf.gz
-rwxrwxr-x  1 jlvillanueva jlvillanueva 37500280 Dec 18 15:44 somalier*
(base) jlvillanueva@EEP10709:~/Downloads/somalier_aina$ ./somalier ancestry --labels ancestry-labels-1kg.tsv 1kg.somalier/*.somalier ++ cohort/*.somalier
somalier version: 0.2.18
SIGSEGV: Illegal storage access. (Attempt to read from nil?)
Segmentation fault (core dumped)

egenomics avatar Dec 18 '23 15:12 egenomics