Roman Valls Guimera

> I appreciate you taking a fresh look at the problem! > > The concern around redistribution of modified SVDs is about their copyright. I don't know how significant the...

@olgabot Here's bcbio's wrapper: https://github.com/chapmanb/bcbio-nextgen/blob/652c41f395dca98655dafdc8b9659292023a92c4/bcbio/ngsalign/star.py Hope it helps as a starting point!

``` TASK [flask-stack : Copy application config to remote] ************************************************************************************************************************************************************************************************** fatal: [ec2-13-55-18-20.ap-southeast-2.compute.amazonaws.com]: FAILED! => {"msg": "The conditional check 'flaskapp_app_config_file is defined and flaskapp_app_config_file.stat.exists' failed. The error was: error while evaluating...

``` TASK [flask-stack : Run post hooks] ********************************************************************************************************************************************************************************************************************* [WARNING]: could not parse environment value, skipping: ['flaskapp_app_environment'] failed: [ec2-13-55-18-20.ap-southeast-2.compute.amazonaws.com] (item=flaskapp_app_post_hooks) => {"changed": false, "cmd": "flaskapp_app_post_hooks", "item": "flaskapp_app_post_hooks", "msg": "[Errno 2] No...

Alternatively you can now install this package with Bioconda: https://github.com/bioconda/bioconda-recipes/pull/8205

I have a very specific and (potentially useful) functionality in mind: exposing VCF's as API's like iobio does and/or exporting it into Pandas/Dato/R DataFrames for later exploration. Will give a...

I'm with @seandavi on this issue. For instance, having a Record model that is directly [JSON-serializable](http://stackoverflow.com/questions/18478287/making-object-json-serializable-with-regular-encoder) would be much nicer than having to `json.dumps()` every attribute (CHROM, REF, INFO...). Ideally...

There's some audio SDK example ready to be integrated in Majestic from the Russian Telegram channel: https://t.me/openipc_modding/184685

Thanks @satra! Yes, we saw that one and later on we went through the following: https://github.com/incf-nidash/nidm-results_fsl/blob/master/NIDMStat.py Plus some other NIDM people walked into the room and briefed us on the...

A [`sambamba slice`](https://lomereiter.github.io/sambamba/docs/sambamba-slice.html), pretty please? :D