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Published 20 hours ago • verified publisher icon walaj

installation error

Open frankbioinfo opened this issue 8 years ago • 3 comments
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Hello team,

Thanks for developing bxtools.

While installing i encounter this error.

thread_pool.c: In function ‘hts_tpool_init’: thread_pool.c:676: warning: implicit declaration of function ‘pthread_mutexattr_settype’ thread_pool.c:676: error: ‘PTHREAD_MUTEX_RECURSIVE’ undeclared (first use in this function) thread_pool.c:676: error: (Each undeclared identifier is reported only once thread_pool.c:676: error: for each function it appears in.) make[2]: *** [thread_pool.o] Error 1

Is it common?

Thanks.

Frank

frankbioinfo avatar Nov 02 '17 21:11 frankbioinfo

Hi Frank, Are you still having this issue? Are you able to compile htslib, aside from bxtools? That might give some clues. I haven't seen this issue before. Jeremiah

walaj avatar Dec 13 '17 17:12 walaj

Alternatively you can now install this package with Bioconda:

https://github.com/bioconda/bioconda-recipes/pull/8205

brainstorm avatar Mar 09 '18 04:03 brainstorm

Sorry all, i was able to install it using docker image, can i request if anyone from the team can build a docker image for this it will be very helpful just a thought.

Thanks for response.

Frank

frankbioinfo avatar Mar 09 '18 23:03 frankbioinfo