Roman Valls Guimera

I'm totally with @mr-c, we should focus first on CWL, not on specific tools since the amount of work can be quite substantial. If you want to see whether one...

OTOH, for a good example on how to test different tools (in my case SV callers), MetaSV has it quite well wrapped up: https://github.com/bioinform/metasv But this is just an example,...

@etal, very happy to have you help Anton with that. I was looking at the `outputs` generated by `argparse2cwl` yesterday but since I never used CNVkit before, I'm missing a...

Perhaps using the bundled nginx in each distro would be enough and more future-proof? Doesn't seem like this usecase requires very latest releases of nginx after all, right?

Just switched, there seem to be some side-effects with the builtin package (nginx user): ``` TASK: [ansible-elk | Kibana archive available] ******************************** failed: [23.253.172.105] => {"failed": true, "gid": 0, "group":...

That ☝🏻 and `pkg install binutils` did it for me: https://github.com/termux/termux-packages/issues/11177#issuecomment-1176975307

@lbergelson @lindenb I'm currently implementing support for `htsget://` loading of (remote) assets in [Hartwig's hmftools](https://github.com/hartwigmedical/hmftools/): https://github.com/umccr/hmftools/compare/89de3d8a19276ed23d568ceeb6dc41de9fdbd675..17ade02e451be6100d5c69e4d8ec78d65a607215 I've got BAM reading [through our htsget server](https://github.com/umccr/htsget-rs) working alright, but looking for `SamInputReader.of()`...

I suspect that was the plan with issue https://github.com/GMOD/jbrowse/issues/1142 ?

Thanks @cmdcolin! @jb-adams will be tilting the GA4GH htsget server back by the end of this week so you can tackle that issue. Points 3&4: Understood, our team has its...

And/or potentially substitute ravedude for this one?: https://github.com/luqasz/avrisp As discussed in probe-rs in https://github.com/probe-rs/probe-rs/discussions/391