bpyenson

ambient rna.txt variability

4

Hi, How do I access the the variance of ambient rna calculated for each cluster? Or, is the parameter p used for estimating ambient rna the same across all clusters?...

No doublet output = 0 doublets?

1

Hi, I've loved using souporcell for my single nucleus RNAseq analysis. Thanks to Haynes and the team for making such a good program. On one dataset, though, I saw a...

high storage use on HPC

4

Hi all, I've been very happy using souporcell and this forum has been excellent to answer many of my questions. Thanks. I am running souporcell on the same sample dataset,...

error in doublet detection

3

Hi, I ran into some storage issues on the HPC where I was running souporcell around Christmas. Therefore, I downloaded the most up-to-date version of souporcell in January 2023. The...

allowWGCNAThreads() use instead of enableWGCNAThreads() for RStudio, MacOSX

3

Hi, Thanks for creating such a great tool! And congratulations on defending your PhD! Just a note that using my settings (described below), I continually got an error with TestSoftPowers...

Hi, I could not install MultiK from github on R locally on my computer (MacOSX). Instead, I have downloaded the whole .zip file and am running each R function (MultiK,...