bpyenson

Hello, Thank you so much for this posting and the excellent software. I am learning so much! Two questions below related to this topic. 1. I am struggling to figure...

Hi Dr. Heaton, I very much appreciate your quick and thorough responses. The software you designed is very useful! I understand from the output that a certain proportion of cell...

As an update, the same issue occurs for unassigned, where presumably the absence of printing of results means that unassigned nuclei=0. Here is an example: > clusters=read.table(paste0("clusters.tsv"),header=T) > table(clusters$status) doublet...

Hi Haynes, Thanks for your feedback. I did additional tests on the HPC (high-performance computer cluster) with older (i.e. Sept 2022 version of souporcell) and newer (i.e. February 2023). They...

Hi again Haynes, Attached is the output of the 4 err files. #### bcftools.err #### Writing to /tmp/bcftools-sort.alELLC Merging 1 temporary files Cleaning Done #### clusters.err #### total loci used...

As I noted above my fix (Solution: Basically, instead of enableWGCNAThreads(), use allowWGCNAThreads()), worked for me on my machine. What is the output about your machine when you type sessionInfo()...