bounlu
bounlu
I have the same problem. I added ssh key with `ssh-add` but still does not work with private repo on macOS.
@glours same for me
> > I have the same problem. I added ssh key with `ssh-add` but still does not work with private repo on macOS. > > @bounlu you're mentioning `ssh` but...
Maybe you can provide a dummy empty VCF file for now to trick the pipeline?
It should work since that VCF will be used to substract the SNPs/indels only. So x - 0 = x meaning that you will get out back what goes in....
Hi @maxulysse Yes, updating the version number from `104.3` to `108.2` [here](https://github.com/nf-core/rnavar/blob/222d7a15f7f52ff6ce85d0dabb0f3025370690df/conf/modules.config#L363) or in a custom config file fixed it: container = { params.genome ? "nfcore/vep:104.3.${params.genome}" : "nfcore/vep:104.3.${params.vep_genome}" } I...
Hi @praveenraj2018 Has this been already fixed in the dev branch?
If the first error isn't necessarily an error, can we implement a graceful failure without an error in those cases, possible a warning, as it causes the break down of...
I have regenerated the gzipped files and tested with `fq lint`. The files were previously corrupted as you indicated as they passed `fq lint` this time.
Currently I have the below issue during building from the source: ``` cd /tmp && \ git clone https://github.com/TimoLassmann/samstat.git && \ cd samstat && \ mkdir build && \ cd...