bounlu
bounlu
How could you solve your problem?
@FriederikeHanssen Thanks for the updated container, I will also test with that and let you know. @nschcolnicov My `.command.sh` also has 4 paramaters, and my data is paired.
I confirm that I still get the same error with the updated container.
In the new version `3.3.2`, I still get error from `CONTROLFREEC`, this time from `MAKEGRAPH` process: ``` Execution cancelled -- Finishing pending tasks before exit ERROR ~ Error executing process...
Hi Sara, We also run it 3 times, but for lambda and puc19 we use only unaligned reads to human from Bismark with `--unmapped` parameter on, which is about 15%...
May I suggest to implement to run in `defect` mode as suggested by Preseq developer when the number of reads is >50M? `ERROR: too many defects in the approximation, consider...
Me and other people have reported the same error [here](https://github.com/nf-core/smrnaseq/issues/221).
Scale down feature will be very useful. Please add it.
@MikeKroell 's code did not work in my case to find the root EBS volume. Can we also utilise the root volume as part of the logical volume? ``` $...
@lichennan123 No