Ben Parks

Hi @Sirin24, glad that BPCells has been useful for you! If you want to write to h5ad, first thing you'll want is to use the function [`write_matrix_anndata_hdf5()`](https://bnprks.github.io/BPCells/reference/open_matrix_anndata_hdf5.html). This will write...

Hi @Flu09, based on the error message it looks like somehow you constructed your Seurat `mergedsamples` object to have a BPCells-backed matrix for the counts layer, but not for the...

Hi @Sandman-1, thanks for your question! First off, 40 hours is much longer than this operation should take -- I think 4 million cells with 2k variable features and k=50...

Hmm, I strongly suspect that the TridiagEigen error has to do with the contents of your matrix. Have you checked whether it is possible to run svd on the matrix...

Hi @Sandman-1, I'm back from vacation now. I did think of another troubleshooting thing you could test, which would be calling `svd

Hi @Sandman-1, glad that you were able to get the SVDs sorted out. You can lower the number of clusters you get by setting the `resolution` parameter smaller (I'd suggest...

Hi @fuxialexander, thanks for reaching out! I've taken a quick skim through the changes you've made in your fork. It's very impressive that you were able to jump in and...

Hi @fuxialexander, sorry for the delay getting back to you. I've put my notes below. It's mostly a lot of interface-type requests to make sure that what you add matches...

Hi Xi, thanks for the new edits! I'll try to look them over within the next week.

Hi @littlemingone, thanks for your question. I won't have access to a windows computer for the next two weeks so I probably won't be able to make fixes myself to...