Ben Parks
Ben Parks
I was recently using the ENCODE public trackhub to look up some human transcription factor ChIP-seq tracks. I found it pretty challenging to find the right tracks to load, however,...
ArchR's `.addGeneScoreMat` function incorrectly calculates what region flanking a gene to include in the gene score in the presence of fully overlapping genes. This issue affects about 16% of genes...
This pull request adds queries for @statement.outer in R. The design will properly detect top-level statements and statements within a function, loop, or conditional block One slight weirdness of this...
This adds support for top-level statements in Python `@statement.outer`, which enables statement selection in a scripting context where there is no enclosing block.
`SampleUMI` unexpectedly does not perform a traditional *random* sampling of UMIs. This seems unexpected given the name of the function, so I suggest either the algorithm is changed, or the...
Hi, I'm considering implementing Pow function pull request for highway and wanted to check scope/goals before jumping in too much further. My rough plan would be: 1. Start from SLEEF's...
The double-precision exp functions in Sleef appear to return infinity at slightly too low a value. The current cutoff input above which Sleef returns infinity is: `709.78271114955742909217217426` However, `709.78271289338399673222338991` seems...
Thanks for writing and maintaining such a fast and useful library! I've noticed some precision issues where the erf function with f32 inputs may exceed the documented 1.0 ULP error...
The usage section of the html docs for S4 method implementations of comparison generics incorrectly renders `` with `<` and `>` Minimal reproducible package example here: https://github.com/bnprks/pkgdownbug (incorrectly rendered reference...
Thanks for publishing this package! I've found it very useful to get fast wilcoxon tests, however I've noticed some of the auxiliary stats returned are incorrect which could cause issues...