Ben Parks

Thanks for the bug report! You were right that the issue had to do with the MatrixSubset class (actually any transformation shared the problem). I've fixed this now so updated...

Hi @Dario-Rocha, thanks for the very clear report with the reproducible example -- it made it quick to reproduce the bug on my end. I've fixed this issue in the...

Hi @Victor21v, thanks for your question. Have you checked if your issue persists after re-installing the BPCells from the most recent github version? This has been an area where we...

Hi @Artur-man, we have some operations along these lines which implement a subset of the widely-used [`matrixStats` interfaces](https://cran.r-project.org/web/packages/matrixStats/vignettes/matrixStats-methods.html). We don't currently have a global `min` or `max` function, but we...

Hi @pravinvel98, thanks for your question, and for providing the full debug logs. Apologies on the delay getting back to you. The error you see in highway compilation is expected...

Hi @NormalLomo, just chiming in with another option. If all you want to do is sum or average row (or column) groups, then this can be represented as a matrix...

Yeah, it seems like a good idea to update since `hwy` is making steady improvements. I think there are two bits I'd like to nail down: 1. Precisely which commit...

I consolidated to a single linux/mac script to build dependencies from source, then switched to recommending that in `DEVELOP.md` for a simpler (albeit slower) setup process. Also made a few...

Hi Cristian, thanks for your bug report! The easiest way to access h5ad data from BPCells is to directly read it with [`open_matrix_anndata_hdf5()`](https://bnprks.github.io/BPCells/reference/open_matrix_anndata_hdf5.html). You can optionally write that matrix into...

Hi Cristian, I think Seurat already has compatibility with BPCells objects in their `FindVariableFeatures()` method when using `selection.method = "vst"`. Is that what you're looking for? (i.e. make a Seurat...