biolink-model
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biolink
Schema and generated objects for biolink data model and upper ontology
we currently map blm sequence variant to http://purl.obolibrary.org/obo/GENO_0000002 this represents an actual state, i.e. allele need to decide on slots the variant class will have, cc @deepakunni3 @julesjacobsen @mbrush *...
I'm going through the process of converting some biomedical network data I have to the biolink model and I've run into a few mapping issues. As context, the network I'm...
Naive question here... In the context of Translator, it seems likely that we will eventually want to model some detailed pharmacological modes of action, e.g., "antagonist" vs "inverse agonist". As...
(quick notes from Translator E/P call) Ideally all assertions would be made on species-specific proteins. However, this is not always possible, e.g NLP. Here PRO classes are used that are...
for capturing provenance that does not fit into the "publication" slot, for example
I can see at least 3 different forms of provenance relating to a (machine-readable) statement e.g. one represented using the biolink model. The **first** form of provenance relates to the...
- is my data compatible with the biolink-model. - how do I transform my relational model into a biolink-model compliant KG. - is my KG compatible? - is it all...
**Is your feature request related to a problem? Please describe.** Some mapped relations are in prefix:human_readable_label form, some are in prefix:stable_ID_number form. Some come from a formal ontology, some are...
Need to review status of prefix/URI namespaces in the BIolink Model for internet resolvability. A related issue is to use the "correct" URI mapping (e.g. see issue #648)
Continuing evolution and design decisions suggest various quality assurance measures which could be computationally assessed (using a Biolink Model-specific script). This is a placeholder for this objective. Some of the...