biolink-model
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biolink
Schema and generated objects for biolink data model and upper ontology
We have a separate ticket for the basic mapping: #3 However, the difference in overall modeling strategy should be documented. Briefly: * biolink is heavily "link" or *Association*-oriented. E.g bioschemas...
per linkml conversation, we'd like to add sbol mappings to biolink-model. sbolstandard.org/ontology
See https://github.com/stuchalk/scidata
CausalTab: https://signor.uniroma2.it/scripts/causalTabInfo.php * Add "Direct effect in other interactions: taken from the PSI PSI-MI controlled vocabulary cooperative interaction" https://www.ebi.ac.uk/ols/ontologies/mi/terms?iri=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FMI_1149 * Add subject/object roles "Experimental role A , taken from the...
We have both skos-based mapping predicates * https://w3id.org/biolink/vocab/exact_match * https://w3id.org/biolink/vocab/narrow_match and * https://w3id.org/biolink/vocab/xref We need guidance as to when to use which. I recommend even deprecating xref and forcing people...
**A clear and concise description of what the request is.** I want to represent exposure outcomes in Biolink. **What working group (or team) did this request originate from?** The need...
Note related to translator but would be good to have a standard biolink compliant way of stating globi graphs cc @diatomsRcool. I will explain this later @jhpoelen
**Is your feature request related to a problem? Please describe.** @cbizon reported, on behalf of the Molecular Data KP, "the molpro team has some interesting similarity metrics based on CMAP....
From the discussion in #datamodeling: Eugene: Beyond the obvious PubMed IDs, what kinds of attributes would be considered core standards for provenance? I brought up ECO codes, which a few...
Different use cases require different views or perspectives on the data model. We should implement a computable system for declaring how to transform between views. Some of these will be...