biolink-model
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biolink
Schema and generated objects for biolink data model and upper ontology
Data sources use a variety of modeling elements to describe the collection of genetic elements that together produce a particular phenotype or contribute to disease progression. We'd like one abstract...
I recently made a proposal on how edges might be merged: https://github.com/NCATSTranslator/TranslatorArchitecture/pull/70 With edge merging, there is some necessary changes that would need to be considered to maintain provenance information....
From Richard: predicate stating that “A ‘measures’ B”? Measurement of (maybe inverses) Superb cardiovascular imaging (diagnostic procedure) measures weight (of the heart?) lots of ontology terms mapped to weight (maybe...
- [x] avoid regeneration of artifacts locally that should only be regenerated by actions - [x] use poetry vs. pipenv - [x] make sure tests run on each PR
At present, too many predicates are included under the 'increases amount or activity of mixin. e.g. most of the affects /increases / decreases predicates created for CTD data do not...
@vdancik had a suggestion re https://biolink.github.io/biolink-model/docs/: move useful links that are currently at the bottom of the left sidebar to the top. ...
Resolves issue #943
**Is your feature request related to a problem? Please describe.** The best practices for modelling sets of things in Biolink remains somewhat undefined or, at best, heterogeneously defined. **What working...
Gene orthology knowledge curation (i.e. from the [Panther database]()) relates gene instances to gene families. It's relatively easy to infer guess what concept nodes need to be captured, i.e. `biolink:Gene`...
Are there any mappings to CHEBI that could be added for small molecule? If there is no single parent term, are there a few more specific terms that could be...
