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Official QIIME 1 software repository. QIIME 2 (https://qiime2.org) has succeeded QIIME 1 as of January 2018.
There was a concern on the [qiime forums](https://groups.google.com/forum/#!topic/qiime-forum/-Q-BAhkVXY0) that `compute_core_microbiome.py` fails when there is no observation metadata (i.e. taxonomy) present. Should having this metadata be a strict requirement to run?...
This PR does 3 things: 1. Addresses issue #2061: It changes the way `qiime.filter.filter_mapping_file` behaves to match the documentation. 2. Changes the result `--output_mapping_fp` in `filter_samples_from_otu_table.py`: now writes a subsetted...
the script logs that is doing: ``` logger.write('# Subsample the failures fasta file using API \n' + 'python -c "import qiime; qiime.util.subsample_fasta' + ``` which is not accurate or correct.
Hello. I work at North Carolina State University in the Biotechnology program. We use Qiime in our metagenomics class. The students requested that I record a tutorial on installing Qiime...
using the script `observation_metadata_correlation.py` with `-s cscore` results in failure because the metadata from the mapping file isn't cast as an array. line 2428 needs to change to: ``` python...
Hello all. If the mandatory Description field in the mapping file is left empty, the compare_categories.py script throws the following error where the method is adonis. Traceback (most recent call...
In the virtual box install [instructions](http://qiime.org/install/virtual_box.html), the point 6 still refers to a file named `Welcome`. However, this file no longer exists and the actual file is `0.QIIME_version.txt`.
Once upon a time (apparently as recently as release 1.8.0, see http://qiime.org/1.8.0/tutorials/illumina_overview_tutorial.html ), the Illumina Overview Tutorial html page had a prominent red banner instructing users how to download the...
Originally reported on the [qiime-forum](https://groups.google.com/forum/#!topic/qiime-forum/mf8TmjJvn4k) by Marie. The expectation below is that OTU 0 should have a count of 3 and OTU 1 should have a count of 4. It...
