qiime
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Official QIIME 1 software repository. QIIME 2 (https://qiime2.org) has succeeded QIIME 1 as of January 2018.
from matplotlib import pyplot as plt from scipy import optimize as opt model.compile(loss="categorical_crossentropy", optimizer=opt, metrics=["acc"]) plt.plot(history.history['acc'], label='acc') plt.plot(history.history['val_acc'], label='val_acc') plt.legend() plt.show()
I am pretty new to using these tools, so I hope I am not an inconvenience. I am having problems with processing of an outputfile of joined reads, processed with...
This command only support for usearch5 by default, which is old and not so useful. Can you please help with it (I do not like qiime2 because I do not...
I am trying to run an alignment with ClustalW, but I keep receiving this error... Traceback (most recent call last): File "/macqiime/anaconda/bin/align_seqs.py", line 211, in main() File "/macqiime/anaconda/bin/align_seqs.py", line 208,...
Hello, I have one question. If the QIIME2 supports to analysis the sequence data by Pac-Bio Single Molecule Real-Time Sequencing Technique. Can you help me? Looking forward to your reply....
During a quality filtering step of joined reads I keep getting an error message about phred_offset. I am running the multiple_split_libraries_fastq.py command. error: ```skbio.parse.sequences._exception.FastqParseError: Failed qual conversion for seq id:...
My heatmap is not showing any differentiation. I have used the regarded code on qiime. Should I make a mapping file? I am new to qiime and very confused. Below...
Hi there, I want to generate OTU table with fasta file for view in excel. I have tried some ways to combine both files separately but it's not working for...
Hello,can you explain to me what does n=8 in Alpha Diversity Boxplots mean?How did this value come from?thank you!
Hello, I am running alph_rarefraction.py for one of my sample. But i am getting an error. The Matrices generations running successfully. But after that, alpha diveristy plots are not creating....
