Beth Cimini

Load only some rows when loading data into SingleCells

6

(Split from #245) Right now, it is possible to subsample the data afterward to certain rows but there is no way to subset before loading in everything. This is a...

Support SQLAlchemy 2

1

Requires https://github.com/pandas-dev/pandas/issues/51061

Question about noise removal

1

Purely a question - was it ever considered to use CV rather than pure standard deviation in this feature? This is an obviously artificial example, but to me I would...

Same idea as #4401 , at least for 2 channel (did not test others)

**Is your feature request related to a problem? Please describe.** The [ImageTemplate plugin run function](https://github.com/CellProfiler/CellProfiler/blob/611ab2abd59b80230889d9f56fcc1954fb13d3d4/src/frontend/cellprofiler/modules/plugins/imagetemplate.py#L333-L348) tries to make life very simple by abstracting away all the CellProfiler-y-ness and actually just...

Add segmentation-plugin-that-requires-external-dependencies template

1

These will likely usually, though need not be, DL segmentation things we want to run in inference. I don't see that happening _less_ often anytime soon!

**Is your feature request related to a problem? Please describe.** @sugan89 and I were trying to replicate Cellpose's [rescaling behavior](https://github.com/MouseLand/cellpose/blob/v2.3.2/cellpose/transforms.py#L192-L198), which is to scale each image to the 1st to...

The module runs, but you just get a view like this. Current 4.2.6 build.