Beth Cimini
Beth Cimini
Most of the detail and the stack trace is in https://github.com/CellProfiler/centrosome/issues/106. I wanted to open this here too because from a quick google Mahotas also has a Zernike implementation, I...
**Is your feature request related to a problem? Please describe.** Translation based alignments are nice for things like "we took this plate off of and put back onto the microscope,...
(I swear we had an issue open for this but I can't find it) **Is your feature request related to a problem? Please describe.** MatchTemplate is great, but its utility...
This pull request adds 3D functionality to the display for FindMaxima. Thanks @alicelucas, @ErinWeisbart, @NasimJ, @bdiazroh, and @rsenft1 for hanging out and working on this together!
**Is your feature request related to a problem? Please describe.** In 4.1.3, we added back the option to do [centrosome's version of a "log transform"](https://github.com/CellProfiler/centrosome/blob/fdc2aea28811285e01a14f83464b978879f1f5f4/centrosome/threshold.py#L871-L883) before thresholding, and we (and...
Right now, if you use ExportToSpreadsheet on a large number of images that are sorted in groups, it avoids the ">500 image set" warning if the size of each individual...
We're trying to write a pipeline using LoadData that uses the "SingleName" option in SaveImages along with some passed metadata to write out files with a similar name to one...
**Describe the bug** From the [forum](https://forum.image.sc/t/lap-tracker-cellprofiler-valueerror-dealing-with-no-objects/42694) >I had a bug in CP4.0.2 using hte lap tracker: “ValueError all the input arrayw dimensions for the concatenation axis must match exactly…” ......
As [this forum user points out](http://forum.cellprofiler.org/t/how-to-save-module-display-window/2489/6) If you turn on the `Export the neuron graphs?` option in MeasureNeurons, in addition to the vertex and edge CSVs it creates a neuron...
In an image from the [forum](https://forum.image.sc/t/metadata-reading-problem/51191/3?u=bcimini) (image attached here as well). Fails to open in CellProfiler with the error below, metadata etc posted underneath. [Spat-1-1.oir.zip](https://github.com/CellProfiler/python-bioformats/files/6287390/Spat-1-1.oir.zip) ``` [Fatal Error] :1:35: Character...