Benjamin Buchfink comments

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                                            Benjamin Buchfink

Failed building databases using GTDB-taxdump taxonomy files

The taxids used in these files are > 2^31, that is not supported at the moment. I'll see what I can do about this.

diamond blastx doesn't always return highest scoring hit with -k 1

One reason could be the ranking heuristic, which could be more pronounced if you look for hits down to 10 bitscore. Can you try using `--no-ranking`?

diamond blastx doesn't always return highest scoring hit with -k 1

I did a quick test aligning a sample of 10,000 reads from the SRA dataset you mentioned against the NR, using `-k1` and using `-k0` (report all hits). The top...

Add NEON implementation for `armv7` and `aarch64` platforms

Hi Martin. Thanks, that's really great work and very happy that it will finally be possible to run Diamond on ARM with vectorization. Please permit me some time to look...

Exception: diamond error! error code: -6

> Thanks for the update @Ahmed-Shibl. Now, I'm curious if it's the same story for @dfornika. We often see Diamond issues with varying error codes, mainly `6` and `9`. I...

diamond+megan

For import in Megan DAA should still be the best format afaik.

Inconsistent taxonomy assignment results for the same sequences

I'm not really sure what's happening here you would have to look at all the alignments in detail.

Query length in SAM output

Sure, I will include this in the next release.

Query length in SAM output

You're right sorry, will fix in the next release.

You need to download a version that was compiled with BLAST db support, e.g. here: https://github.com/bbuchfink/diamond/releases Am Do., 8. Feb. 2024 um 16:48 Uhr schrieb vdnadung ***@***.*** >: > Hello...