Benjamin Buchfink
Benjamin Buchfink
> Hi Cherylhh, > > Can you tell me how you solve the issue? I am also struggling with the same issue. What is your diamond version?
This problem has already been fixed in v2.0.9. It allows to build databases with very little memory.
You can retrieve the read from your query file using the sequence id that diamond reports. You can also have diamond report the query sequence in the tabular output using...
It's not that simple to convert diamond output to BAM because that format was only designed for DNA alignments. You can't store protein sequences in BAM files because they only...
Unfortunately the BAM format does not support protein sequences. Maybe the output of diamond blastx can be converted to BAM, I will take another look at that.
I'm not sure if it would be useful to try and modify the SAM/BAM format for protein alignments. What kind of downstream features are you interested in?
Hi, it would be possible but I'm not sure if it would be that useful. I usually don't recommend running multiple instances of diamond on the same host because the...
It means the file does not exist, check your path.
I'm aware of the issue, a fix should be available soon.
It is possible to do abort and resume using the multiprocessing feature, see here: https://github.com/bbuchfink/diamond/wiki/6.-Distributed-computing