Benjamin Buchfink
Benjamin Buchfink
Please try using a smaller block size (like `-b0.4`) and also `--log`. How long are your query sequences?
It could be due to the length. You can also try turning off the masking using `--masking 0`.
It refers to the ids from the ncbi taxonomy: https://www.ncbi.nlm.nih.gov/taxonomy
Are you saying that you didn't put this sequence (WP_015983405.1) into your database? Please double check your input fasta file to `diamond makedb`. Please also let me know your command...
Have you tried the more sensitive modes of Diamond, like `--very-sensitive`? Have you tried using the online BLAST to see if there are viral hits?
It believe it is usually recommended but I'm not an expert on the matter.
Your log does not show the Diamond console output. Please see here on how to activate this: https://github.com/dutilh/CAT/issues/37
This is still missing the console output from Diamond, which I need to get an idea why it's failing. Please try to find this or ask at the CAT repo...
I can confirm the bug and will try to provide a fix in the near future.
Unfortunately the blast2go import has been an ongoing problem which works for some people but sometimes it doesn't. I will try looking into this again but the lack of clear...