Benjamin Buchfink
Benjamin Buchfink
Hi Darren, that's definitely going to happen, hopefully in the near future.
It's on a long todo list, but I'll see what I can do.
You can use your own files but they need to have the same format as the ncbi files.
These links work fine. You can try using wget on the command line or try to use https:// instead of ftp://.
How much memory have you allocated to the job in your slurm submit script? It could be that frameshift alignments or range culling lead to increased memory usage. Could you...
Yes, I think you probably need to request more memory in your submit script.
I'm not sure what causes this high memory use and will have to look into it. If you want, you can send me your query file so I can try...
Sure, my email is [email protected]
It was the DP matrices in traceback mode that were using up too much memory. This should fix the issue: 199cd79732060bda7356417e8ae8c27e75157570 Using this I was able to run your dataset...
Bus error does not seem like a memory problem any more. How much free space does your /tmp/ folder have?