Problem with diamond on upload result to Blast2Go

[hangsucici]

Dear Diamond Developer,

Diamond (version 0.9.24 ) is very fast tool to run a NCBI Blast. I love this tool very much. Now I am facing a problem when I performed the blastx search with diamond with -f 5 option for xml output. And then I uploaded the result xml files into Blast2go (the newest edition). It only loads the files partially. I have seen the number of gene entries in my xml files are around 60,000 , but it loads around 8000 of entries only and not the whole results. I used the following command : diamond blastx -d ../nr -q Query.fa -f 5 -o output.xml Moreover, Blast2GO is not giving any error message. Could you help me figure out this problem?

Regards Hang

[bbuchfink]

Unfortunately the blast2go import has been an ongoing problem which works for some people but sometimes it doesn't. I will try looking into this again but the lack of clear error messages in blast2go makes it hard.

[chenchen-dong]

Is there a way to convert the default output format to xml so that I could load it to Blast2Go without running diamond again with specified -o xml?

[bbuchfink]

No that's not possible.