Biafra Ahanonu

Thanks. Can you send the following info: - Matlab version. - Size of M, e.g. `disp(size(M));` - Output on the command window before the errors begin.

Great, thanks. Looks like `M` is not in the correct format (`x y nFrames`). Is that a path to a movie? If so, give the full path rather than just...

Try below and let me know if that works for you. If you run into issues, run `h5disp('D:\lumi_data\data_day4\trial.h5')` to make sure dataset name is `/1`. ```Matlab iopts.inputMovie = 'D:\lumi_data\data_day4\trial.h5'; iopts.readMovieChunks...

Great! Glad to hear it is working. Let me know if any other questions come up. Those warnings should not affect function, but I'll double check in my copy of...

hey Benson, great to hear things are working out for you. To grab the SNR you can load in the already processed data then compute SNR as below: ```Matlab %...

@Hanbing1999 Hi, could you provide the list of files in that directory and what you run before the cell extraction step? If https://github.com/bahanonu/calciumImagingAnalysis#manual-movie-cropping-with-modelmodifymovies has not been run after preprocessing the...

@Hanbing1999 Were you able to solve this issue?

@miguelvmc Hope all's well and glad you-all are finding the tool useful. It looks like CNMF-e ran correctly but the post cell-extraction step to save the runtimes to a file...

Sure thing! - If you re-run cnmf-e using `dfof` as the file filter, should run fine. I can see about making this clearer for users. I'll push an update anyways...

@miguelvmc Hope all is well, see below. re: viewCellExtractionOnMovie, is the absolute path input into "modelAddNewFolders" pointing to the correct folder or is the mat file the expected size (e.g....