Biafra Ahanonu

Thanks, will take a look. Could you send a movie without spatial filtering? Will make it easier to test pre-processing on my end (e.g. spatial filtering for motion correction can...

@lalde Great to hear CIAtah is working out for you-all! Let me know if there's anything they'd like improved or features added. For CNMF-e, I normally use either `extractedSignals` or...

Hey Omid, hope all is well. Yep, that is the correct EXTRACT method. I have that updated locally but need to push and merge the updated branch sometime today/tomorrow. Let...

@omidm7 This is updated in the most recent version.

hey Omid, looks like the `graphconncomp` function is causing the error, does your 2017b installation have the `Bioinformatics Toolbox` installed? Can you send the output of `ciapkg.io.dependencyCheck` on the MATLAB...

hey @omidm7, let me take a look at this and get back with any thoughts on what parameters could be tweaked.

Been working on improvements to get around RAM-limitation based memory issues when using `modelPreprocessMovie` (our newer cell extraction methods do not have this issue). Other work arounds can be done...

Great to hear the downsampling works! For Inscopix miniscope movies often 2x or 4x downsampling in each dimension usually works fine. Did a movie play in ImageJ or MATLAB? Can...

Looks like a turboreg error occurred during 2nd round of motion correction. Do you see `0000_00_00_p000_m1_NULL000_medFlt_detrend_1.h5` movie in the `M1_4` folder? Also, can you run with the below `RegisType` affine...

Thanks for the update on this and glad to hear the downsampled movies worked well for you-all. re: non-downsampled movies. It is possible to improve the RAM efficiency by running...