Biafra Ahanonu

@hsw28 Got email notification of your message but don't see it here. Could you send me the .log file in the `processing_info` folder? Will help me debug. Thanks!

Yep, you can downsample in advance using several ways below. In the near future this will be seamless (`modelPreprocessMovie` will read from disk like other parts of ciatah pipeline to...

> Also, I am using the same parameters as you are above, on the same video, and my post processing video looks completely different. Here is a gif from it...

> thank you thank you!! Sorry for all the questions, just want to make sure I thoroughly understand everything if I will be using this for my analysis pipeline. Sorry...

> also what cell extraction method/parameters did you use above? thanks again The results I showed were from a method (CELLMax) we haven't released yet; I'd have to look in...

@hsw28 hey! Yep, that's likely because you chose `CELLMax` instead of `CNMF` or `PCA-ICA`. e.g. select PCA-ICA as below, let me know if any of the subsequent steps are confusing...

hey! To your first question: hopefully soon, I can likely add you to the private repo if you'd like to try it out before then. re: noise, there should generally...

@hsw28 Wanted to check that the above explanation made sense.

Hi Natalia, Some explanations below. I'll add some of this information to the docs (https://bahanonu.github.io/ciatah/pipeline_detailed_signal_extraction/). As a quick question: what type of data are you analyzing and do you have...

Glad to hear! Would you be able to provide a link (e.g. Dropbox/Box) to one of the movies? I can then take a look and get back with pre-processing/cell extraction...