b-math

Hi. I also use Ubuntu 20.04 and I installed hap.py via conda into a python 2.7 environment. For me it works smootly. However, I did not try to build it...

Hi, I'm not sure I understand your question correctly, but if you want to export a vcf containing all variants, you can append the `-V` (uppercase) flag to your command....

Hi, you can set the path to your reference genome fasta file (replace "$ref_genome_path" by your path): `export HGREF=$ref_genome_path` If you run your command afterwards, it should work. There is...

Hi. Which version of hap.py did you use? I first installed the default version using conda, and got the same error. Now I installed the newest version of hap.py in...

Hello. By appending the -V flag to the command, you get a combined vcf, where each position in query and truth is listed and whether it is found. Hope, that...