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Published 20 hours ago • verified publisher icon Illumina

output_vcf

Open Shreya-droid opened this issue 2 years ago • 1 comments

Where this variable is defined "output_vcf" in hap.py script ??

Shreya-droid avatar Aug 01 '22 13:08 Shreya-droid

Hi, I'm not sure I understand your question correctly, but if you want to export a vcf containing all variants, you can append the -V (uppercase) flag to your command.

Best regards, Barbara

b-math avatar Aug 09 '22 06:08 b-math