Aung Thu Rha Hein

 This settings solve this problem for me. Instead of the error, now i get a black screen on one of the monitor sometime.

Kallisto version is 0.42.4 and this is the error message: ``` finding pseudoalignments for the reads ...Segmentation fault (core dumped) ``` I will download v0.42.5 and try again. I will...

I tried with kallisto ver. 0.42.5 with the following command and the error still persists. Command: ``` kallisto quant -l 605 -s 136 -i Trinity.fasta.kallisto_idx -o aln_out --pseudobam --single lib.fasta...

The index file has more than one sequence. I just reported the end of the stdout. I can run kallisto quant without generating pseudobam successfully. This is the output of...

Yes.I confirmed that `.fasta` file has no quality file. I didn't mention it before because don't expect that it can be the cause of the issue. I will test with...