Issue error code -11
Dear Team,
I ran metaspades with k21 and with an option just for assembly. I am using spades version 3.13. While starting the kmer counting its throwing an error with code -11. I have gone through the log file as well and please find the issue.
0:27:30.918 124M / 17G INFO General (kmer_splitters.hpp : 308) Used 290331456 reads 0:27:30.918 124M / 17G INFO General (kmer_index_builder.hpp : 120) Starting k-mer counting. == Error == system call for: "['/opt/linux/centos/7.x/x86_64/pkgs/SPAdes/3.13.1/bin/spades-core', '/path/K21/configs/config.info', '/path/K21/configs/mda_mode.info', '/path/K21/configs/meta_mode.info']" finished abnormally, err code: -11
Thanking you, Rama.
Please kindly provide us spades.log file as your were instructed in the error message
It is likely a problem with memory mapped files on /path1/.