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Issue error code -11

Open RamaSravanimeduri opened this issue 6 years ago • 3 comments

Dear Team,

I ran metaspades with k21 and with an option just for assembly. I am using spades version 3.13. While starting the kmer counting its throwing an error with code -11. I have gone through the log file as well and please find the issue.

0:27:30.918 124M / 17G INFO General (kmer_splitters.hpp : 308) Used 290331456 reads 0:27:30.918 124M / 17G INFO General (kmer_index_builder.hpp : 120) Starting k-mer counting. == Error == system call for: "['/opt/linux/centos/7.x/x86_64/pkgs/SPAdes/3.13.1/bin/spades-core', '/path/K21/configs/config.info', '/path/K21/configs/mda_mode.info', '/path/K21/configs/meta_mode.info']" finished abnormally, err code: -11

Thanking you, Rama.

RamaSravanimeduri avatar Sep 04 '19 18:09 RamaSravanimeduri

Please kindly provide us spades.log file as your were instructed in the error message

asl avatar Sep 05 '19 09:09 asl

Please find the spades.log file.

spades.log

RamaSravanimeduri avatar Sep 09 '19 17:09 RamaSravanimeduri

It is likely a problem with memory mapped files on /path1/.

asl avatar Oct 29 '19 00:10 asl