Anton Korobeynikov
Anton Korobeynikov
The latest version is SPAdes 3.14: https://github.com/ablab/spades/releases/tag/v3.14.0
Hello Does the issue reproduce with SPAdes 3.14.0?
Hello You SPAdes job is still running. Maybe yet another incarnation of https://github.com/ablab/spades/issues/152
Well, likely someone is killing your metaSPAdes jobs then. I would suggest you to ask your system administrator for this. You can give `--only-assembler` a try.
Tagging metaviralSPAdes' author for the troubleshooting @Dmitry-Antipov
Note that SPAdes 3.15.4 includes a dedicated diagnostics for empty output here. So it won't come as a surprise :)
Smells like a gcc mainline bug: https://gcc.gnu.org/bugzilla/show_bug.cgi?id=86490 So, just do not build with LTO. Overall, this is totally untested configuration
The first step is probably to carefully read the error message and attache the files mentioned there.
@noahaus The error message suggests to attach certain files to problem report. This is something that certainly could provide lots of information for us.
Hello Please at least attach the files mentioned in the error message. Without them no thoughts could be generated.