Anton Korobeynikov comments

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                                            Anton Korobeynikov

Segmentation fault in spades-hammer (error -11)

@notestaff For some reason it is using external boost, not the pre-packaged one. You really need either to patch the external boost (the bug there is sitting uncommitted for ages)...

Segmentation fault in spades-hammer (error -11)

@notestaff Are you building with non-Apple clang with OpenMP enabled?

Segmentation fault in spades-hammer (error -11)

Oh, then you'd need to patch the build scripts a bit: ``` commit cb33372a40645fd179ceb95d273c085134c26239 Author: Anton Korobeynikov Date: Thu Jul 18 00:20:08 2019 +0300 Ensure we're using parallel stdlibc++ when...

Segmentation fault in spades-hammer (error -11)

> Is that expected to make a significant difference? It was built by gcc with OpenMP enabled. There will be some difference, but not that much (the version from website...

Error during metaspades error correction only step-Finished abnormally, err code: 1

Hello Will you please give SPAdes 3.14 a try?

Error during metaspades error correction only step-Finished abnormally, err code: 1

We do not maintain conda packages. Maybe @notestaff knows

Looking for PlasmidDatabase and non-Plasmid Contigs dataset

Assigning the first author of metaplasmidSPAdes paper. He will certainly be able to help you.

Spades stoped with unknown errors!

Please do attach the logs

System call for spades-core finished abnormally, OS return value: -11

Hello Something is strange here. Does the problem reproduce if you'd restart (you could use `spades.py --continue`)?

Spades finished abnormally, err code: -7

Hello This is quite strange (the fail in that particular place)... Does the problem reproduce with the latest SPAdes 3.14?