Ashot Margaryan
Ashot Margaryan
Thanks for the prompt feedback! Here is what I get with the whole vcf file. $ ./somalier_dbg find-sites batch1.Sentieon.biSNPs.vcf.gz somalier version: 0.2.15 on chrom:chr1 on chrom:chr2 on chrom:chr3 on chrom:chr4...
So now the error message is gone but not sure it's working properly, most likely these things were also present in my original run, I just didn't check thoroughly. I...
I will also try to just use a vcf with only autosomes, not sure if the sex chromosomes are interfering with the overall calculations.
Thanks Brent, no worries and sounds good ;)
Thanks, we are getting close but probably not fully there yet! Please see the output below, in short I think we still have all the unfiltered sex chromosomes. I.e., the...
Super, thanks a lot Brent for the prompt response, I think it looks great! Yes, the X/Y chromosomes are now also filtered for quality.
Hi Brent, I've been using the binary of the Somalier (somalier_dbg4.gz) that you shared with me (in this thread above), and it's the Somalier's version: 0.2.16. However, I realised that...
I am working on this module, however at the moment it seems that I cannot assign myself!
Hi @pawelciurkaardigen, could you please have another look at the code. I have now addressed all your comments and also added a new docker (quay.io), singularity and conda images after...
Thanks for the review @nvnieuwk, well noticed, I've accepted the changes. However, do you know why two of the checks are failing?