Weiwen Wang

Hi, I mapped my paired-end reads to the genome using: ngm -t $threads -p -b -r $ref -1 $in1 -2 $in2 -o $outputFile and I found the log said: _[MAIN]...

'DiGraph' object has no attribute 'edge'

11

I am trying to use this to assembly the nanopore reads, but when I run the hinge clip step, I got this error message. "' raymond:$hinge clip-nanopore ecoli.edges.hinges ecoli.hinge.list t1...

Hi, I found if I use fastp to process phred 64 reads (with `-6`), if the data amount is large (such as >20,000 reads, haven't tested the exact number), 1....

Unable to open file: vae.hdf5

7

Hi, This package is very useful, but I got an error when i tried to run the testt sample: ``` ~/devel/DLEPS/code/DLEPS$ python driv_DLEPS.py --input=../../data/Brief_Targetmol_natural_product_2719 --output=../../results/np2719_Browning.csv --upset=../../data/BROWNING_up --downset=../../data/BROWNING_down --reverse=False Using TensorFlow...

illumina data to polish

10

Hi, the manual said the latest version of Racon support illumina reads, but what is the short-read format Racon support? Should I put R1/R2 into one file? or use some...