Anita Schürch

@taylorreiter I agree that `cat` applied to fastq files is not a best practice example. On the other hand, doesn't it give the instructor a chance to explain why `cat`...

I would be fine with omitting cat here and I am pretty sure we can do this safely within the shell lesson, however it would be good to double-check with...

With the recent move of the 'file manipulation' part to Extra, we do not touch the metadata anymore within the regular shell lesson. We can use `cat` on the metadata...

I think this might be related to pull request #228 , pinging @ErinBecker

also related to #290

Note that the intro to 'Moving and Downloading Data' is in the shell-genomics lesson https://datacarpentry.org/shell-genomics/05-writing-scripts/index.html I would highly welcome an easy cross-platform software as suggested by @sstevens2 , as teaching...

I am also not sure why FileZilla was removed, and I sometimes still teach FileZilla instead. Maybe the @datacarpentry/cloud-genomics-maintainers know because that's where moving/copying was located first (see https://github.com/datacarpentry/shell-genomics/issues/207).

Thank you @ralomba, and sorry it took so long to give you feedback on this. I agree that ls -lh is very useful. However, in the content of this lesson,...

@arredondo23 and I taught the lessons, website here: https://aschuerch.github.io/2019-04-08-Utrecht/ 01 Background and metadata: 5 min 02 Assessing Read and Quality: 35 min (reads downloaded during shell episode, FASTQ/Phred score discussed...

Hi Nadine, Thank you very much for this useful feedback. Could you maybe make a suggestion what would be better? If you feel up to it, a pull request would...