Aaron Quinlan
Aaron Quinlan
This seems like overflow. What is the actual depth at this position? Also, are you using a 32 or 64 bit machine?
Any sense of how the memory footprint would scale with pandas?
@38 this does look like a bug. Do you possibly have time to have a look?
Also seems to be incorrectly applying 1bp extensions for length 1 (start==end) in GFF.
Does the `makewindows` tool give you what you need?
This is on the TODO list for this year - hoping to pull it off soon.
we are in the process of moving to htslib support and this functionality will be part of the change.
@jmarshall @brentp @38 is there an API in htslib for creating indexes of FASTA files (uncompressed or otherwise) for reading querying indexed (and possibly BGZF'ed) files in htslib? If so,...
@brentp would you mind tackling this rather useful enhancement?
Hmm, is this standard/expected? I have frankly never seen that before.