piledriver
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wrong numbers with some BAMs
I got bizarre looking numbers for coverage on just single BAM file (one line of the output):
1|F0008AAR.2 998 999 A 50 50 0 140735599270096 140435982010547 1 140435981676544 67669007 636900700782336 1931 219043332221 532575944795 472446402792 . 140735561305050 140435982010544 1 140435981676544 67668767 636900700782336 795 219043332109 532575944795 472446402679 . 37965046 3 0 0 240 0 1136 112 0 113 . 140735561305050|795|37965046|1136,140435982010544|219043332109|3|112,1|532575944795|0|0,140435981676544|472446402679|0|113,67668767|.240|.,.|.
No idea why. Linux, piledriver git cloned on 2013.07.15, gcc 4.4.2.
Darek