Asher Preska Steinberg

Explanation of txClassDescriptions and error message for large bam file.

23

Hi there, Thank you again for helping me the other day with the issues I was having. I've been able to run bambu successfully on some of my samples, and...

### Description of feature Hi, Thank you for creating this awesome pipeline. I'm wondering if there are any modules within sarek that do disambiguation of mouse and human reads for...

Fusion gene analysis?

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Hi there, Thank you again for creating this wonderful tool! I had a question regarding your fusion gene analysis in your recent biorxiv paper: https://www.biorxiv.org/content/10.1101/2021.04.21.440736v1 In the methods, you describe...

Hi there, Thanks for building this great tool! I was wondering if PhyloCSF++ can be used to predict CDS regions for RNA fusions? I have RNA gene fusions for which...

Protein coverage calculation

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Hi all, I had a quick question regarding how the calculation of protein coverage is performed in the `protein.tsv` report. I was trying to compute protein coverage by using the...

Merging read classes across samples results in fewer novel transcripts

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Hi Andre and the Bambu team, I am encountering an issue related to issue #444 . I merged read classes across 44 samples as you had suggested and found that...

Hi Andre and the Bambu team, I am encountering an error when I am running Bambu in quantification mode on some of my samples. After our discussions in issue #448,...