Human and mouse read disambiguation for PDX samples?

[apsteinberg]

Description of feature

Hi,

Thank you for creating this awesome pipeline. I'm wondering if there are any modules within sarek that do disambiguation of mouse and human reads for PDX samples? For example like the disambiguate tool from Astra Zeneca:

https://github.com/AstraZeneca-NGS/disambiguate

Thanks for your time and help.

Best, Asher