lineage
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apriha
tools for genetic genealogy and the analysis of consumer DNA test results
Determine the number of repeats for each Y-STR in [Big Y](https://www.familytreedna.com/learn/y-dna-testing/big-y/big-y/) data from [FTDNA](https://www.familytreedna.com).
Combine techniques identified by Whit Athey in [Phasing the Chromosomes of a Family Group When One Parent is Missing](https://jogg.info/wp-content/uploads/2021/09/61.004.pdf) and the results of [`find_shared_dna`](https://lineage.readthedocs.io/en/stable/lineage.html#lineage.Lineage.find_shared_dna) to reconstruct genomes of maternal and/or...
For each SNP, add information about the SNP's genomic location: * Cytogenic location * Recombination rate at location * Whether SNP is located in a UTR, exon, intron, LINE, SINE,...
Mac os 11.4 I was following the example and encountered the error at this line, everything before this line is identical to the example. results = l.find_shared_dna([user662, user663], cM_threshold=0.75, snp_threshold=1100)
**General Gene Analysis** * Group genes by transcripts * Link to gene information (e.g., [NCBI](https://www.ncbi.nlm.nih.gov), [OMIM](https://www.omim.org), etc.) (see #12 and #22) * Indicate if gene is susceptible to CNV (see...
Add the following capabilities to `lineage` plots / plotting: * Display cytobands, genes, regions susceptible to CNVs (copy number variations), and other genetic markers on plots * Zoom in /...
I'm using lineage==4.3.1. I use it in my code block as I typically do, but I'm now getting a Bac Gateway error message. This is my code block: ``` from...
Essentially, replicate the functionality available through 23andme's comparison function to allow matching and display of multiple individuals at once. This feature would display the shared segment plots for a single...
