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Perform additional analysis for genes / shared genes

Open apriha opened this issue 6 years ago • 0 comments

General Gene Analysis

  • Group genes by transcripts
  • Link to gene information (e.g., NCBI, OMIM, etc.) (see #12 and #22)
  • Indicate if gene is susceptible to CNV (see #22)
  • Identify genomic regions possibly related to gene regulation and susceptible to methylation (e.g., CpG islands)
  • For SNPs in coding regions, identify effect of SNP on amino acid produced compared to reference sequence (i.e., whether variation results in a change of amino acid)

Shared Genes

  • Identify genes partially shared (i.e., gene overlaps shared DNA segment)
  • Identify percentages of coding / non-coding regions shared

apriha avatar Apr 15 '18 23:04 apriha