Andrew Riha

Add support for `spawn` and `forkserver` start methods

1

Thanks for the library! As of Python 3.8, the default start method for multiprocessing processes on macOS is `spawn`; see [here](https://docs.python.org/3/library/multiprocessing.html#contexts-and-start-methods). Unfortunately, as noted in #40 and #28, the current...

Determine the number of repeats for each Y-STR in [Big Y](https://www.familytreedna.com/learn/y-dna-testing/big-y/big-y/) data from [FTDNA](https://www.familytreedna.com).

Add ability to reconstruct genomes

3

Combine techniques identified by Whit Athey in [Phasing the Chromosomes of a Family Group When One Parent is Missing](https://jogg.info/wp-content/uploads/2021/09/61.004.pdf) and the results of [`find_shared_dna`](https://lineage.readthedocs.io/en/stable/lineage.html#lineage.Lineage.find_shared_dna) to reconstruct genomes of maternal and/or...

For each SNP, add information about the SNP's genomic location: * Cytogenic location * Recombination rate at location * Whether SNP is located in a UTR, exon, intron, LINE, SINE,...

**General Gene Analysis** * Group genes by transcripts * Link to gene information (e.g., [NCBI](https://www.ncbi.nlm.nih.gov), [OMIM](https://www.omim.org), etc.) (see #12 and #22) * Indicate if gene is susceptible to CNV (see...

Add the following capabilities to `lineage` plots / plotting: * Display cytobands, genes, regions susceptible to CNVs (copy number variations), and other genetic markers on plots * Zoom in /...

Inconsistent coverage reports

6

Hi guys, I'm not sure if this is a pytest-cov, coverage, or Travis CI issue, but recently my Travis builds have started producing inconsistent coverage reports. For example, with this...

See https://github.com/arvkevi/ezancestry/issues/57.

Identify and filter low quality SNPs

1

Integrate @changlubio's [GenomePrep](https://github.com/changlubio/GenomePrep/) capability to identify and filter low quality SNPs for a SNP array that are "not statistically plausible" based on analysis of [1000 Genomes Project](https://www.internationalgenome.org) data. Requires resolution...

Identify SNP array cluster

1

Integrate @changlubio's [GenomePrep](https://github.com/changlubio/GenomePrep/) capability to identify one of the five primary SNP array clusters for DTC results. Reference: C. Lu, B. Greshake Tzovaras, J. Gough, A survey of direct-to-consumer genotype...