Andrew Riha

It seems random, and I even saw it once where the src coverage was reported for a job and then not reported after restarting the same job shortly after the...

Here is an example of a build where `src` was included in the report, and after restarting the job a few minutes after the first, `src` was not included: https://codecov.io/gh/apriha/snps/commit/57c204a4a436def6fe38d6bce610234c7ed92478/build...

Ok, it looks like the coverage that's being reported in the `src` directory is a function that gets called via `Pool`. I then came across [this](https://pytest-cov.readthedocs.io/en/latest/subprocess-support.html#if-you-use-multiprocessing-pool) and added the recommended...

FYI, since results are not being combined, removing the following from `setup.cfg` fixed the issue for me: ``` [coverage:paths] source = src */site-packages ``` Thanks for providing `pytest-cov`!

Thanks for those examples, they help explain the issue. How about this? 1. remove the singleton to remove confusion 2. keep `resources_dir="resources"` for backwards compatibility (i.e., resources on the local...

Hi, thanks for the note. Yes, VCF and GVCF files should work if the SNPs are annotated with RSID. The files can be loaded like shown in the [examples](https://lineage.readthedocs.io/en/latest/readme.html#load-raw-data). As...

Hi Chai, sorry, the file didn't come through. But yes, you're correct that the total shared cMs is calculated by adding all values in the `cMs` column of the [shared_dna...

Thanks for the suggestion @satishmp . @willgdjones , do you know if this is the [GenCall score](https://www.illumina.com/Documents/products/technotes/technote_infinium_genotyping_data_analysis.pdf)? Per that paper (under "GenCall Score Cutoff"), it looks like SNPs with GenCall...

Thanks for the issue. Can you provide more details or code snippets? I just tested installing and running the `README` examples in a Python 3.8 virtual environment without any issues.

Thanks LaKisha, that helps. `lineage` uses the `snps` library to parse files, so I transferred the issue here. `snps` should be able to read raw AncestryDNA or 23andMe files without...