Alexander Peltzer

Joint Discovery merge with main script

2

In case we dont have > 30 exomes, we could simply set up the VQSR recalibration step to take 30 exome samples from 1000G and use these as calibration samples....

To be compatible with nf-core, we need travis tests !

It should be possible to have different capture methods in a single run, e.g. Agilent v3, v4, v5.

### Description of feature As on the tin

### Description of feature As on the tin

### Description of feature Add GSVA Gene Score analysis

Create CRAN/Bioconductor package?

1

Hi! would you be willing to create a CRAN/Bioconductor package for this? Would be great to have easier installation possibilities for users!

MirTop output changes depending on sample quality

2

### Expected behavior and actual behavior. MirTop seems to create certain summary metrics only for samples with significant quality in the output file(s). This makes downstream tools such as MultiQC...