Alexander Peltzer

Release Preparation Checklist

1

### Description of the bug There are a couple of things to address before a first release: - [x] Move all containers to be biocontainers - [ ] Migrate the...

Hi! this is not necessarily an issue with the pipeline, but in order to streamline the documentation group next week for the hackathon, I'm opening issues in all repositories /...

Please add support for centralized configs soon: https://github.com/nf-core/configs

KMERMAID: Convert all parameter docs to JSON schema

1

Hi! this is not necessarily an issue with the pipeline, but in order to streamline the documentation group next week for the hackathon, I'm opening issues in all repositories /...

Automatic registration of pipelines at bio.tools

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Apparently, it would be possible to fetch our metadata and submit a registration of new pipelines / update our existing pipelines and make them listed at bio.tools: https://biotools.readthedocs.io/en/latest/api_reference.html#register-a-tool Not sure...

Break up Contribution leaderboard

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Might make sense to color the bars on a per pipeline basis after > 200 Commits.

MirTop in Rat not working as expected

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Hi, I am using the singularity profile of smrnaseq (latest version) in rat, with specified Rat genome of Rn6. The output is fine except for the empty mirtop results. Below...

Add Travis CI Testing to ExoSeq

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Starting to work on adding proper testcases for ExoSeq now.

GenotypeGVCFs requires > 30 Exomes . We can't test this properly unfortunately, but should aim in providing - a possibility to include more (pre-computed? gvcfs) to run it properly even...

We should have a Singularity file in here...