Alexander Peltzer

Resume but with new code

6

Hi! @jfy133 and me were debugging an issue on AWS recently and had to start a pipeline run, fix, re-run etc pp. The way I understood it in the UI,...

Duplicate Logging Message

6

I'm running some tests with tower and the `nf-core/rnaseq` pipeline and have a lot of these messages in the nextflow log - not sure whether this is a problem with...

Make output compatible with nf-core/scflow

1

# nf-core/scrnaseq feature request ## Describe the solution you'd like Would be great to generate (extra?) output for the nf-core/scflow pipeline that allows using the output matrices from this pipeline...

Add the copyright holder to Licence file again.

Consider adding Bonito

2

https://github.com/nanoporetech/bonito As an alternative to Guppy...

### Description of the bug not for 2.0.0 nor for 2.1.0 -- megatests not shown: https://nf-co.re/rnafusion/2.0.0/results#rnafusion/results-c47ce6fdbfbbb249b23613f4713dde27e9ca2853/ ### Command used and terminal output _No response_ ### Relevant files _No response_ ###...

Consider AuthentiCT

4

https://github.com/StephanePeyregne/AuthentiCT

Just to note things down while they are fresh: The CircularMapper step should actually be a subworkflow in the DSL2 version, as it encompasses multiple steps that have already existing...

Investigate usage of blanks

1

Some approaches in medical genomics use the blanks to subtract the data sequenced there from the actual samples to remove background noise. Something we should also consider and could easily...

CRAM Output support

7

We should have the possibility to output CRAM files