vdjviz
vdjviz copied to clipboard
antigenomics
⚙️ A lightweight immune repertoire browser
Hi, [mixcr3.0.13](https://github.com/milaboratory/mixcr/releases/tag/v3.0.13) generates clonotype txt files with the following columns (cloneCount, cloneFraction, etc.): ``` cloneId cloneCount cloneFraction targetSequences targetQualities allVHitsWithScore allDHitsWithScore allJHitsWithScore allCHitsWithScore allVAlignments allDAlignments allJAlignments allCAlignments nSeqFR1 minQualFR1 nSeqCDR1...
When I set up ready on Linux, I transfered to webpage to uoload my data exported from vdjtools, and the error occured. Could you help me to see what the...
I spent ~3wks googling almost 24/7... Thanks to the following people/ideas/posts/suggestions/comments/solutions/questions/answers: https://github.com/antigenomics/vdjviz/issues/44#issue-988980903 https://github.com/antigenomics/vdjviz/issues/43#issue-959875923 https://github.com/antigenomics/vdjviz/issues/43#issuecomment-913330278 https://github.com/antigenomics/vdjviz/issues/41#issue-286419158 https://www.digitalocean.com/community/tutorials/how-to-install-java-with-apt-get-on-ubuntu-16-04 https://askubuntu.com/questions/175514/how-to-set-java-home-for-java https://askubuntu.com/a/175519/754619 https://www.cyberciti.biz/faq/how-to-open-firewall-port-on-ubuntu-linux-12-04-14-04-lts/ https://stackoverflow.com/questions/25027891/play-framework-application-not-available-outside-host https://stackoverflow.com/a/25028804/1009306 https://www.cyberciti.biz/faq/howto-configure-setup-firewall-with-ufw-on-ubuntu-linux/ https://ubuntu.com/server/docs/security-firewall @Kaj-cyber, @nukaemon, @snajder-r, @xww52526, @mikessh, @bvdmitri Host:...
Hi, I installed VDJVIZ on Ubuntu. I'm logging in with the default user, and then I'm trying to upload new samples. When I do so, I get an error "Error...
Dear whom it may concerns, I'm using Unbuntu20.04 on my server. After I'm at local host http://localhost:9000/, I cannot login using the e-mail and password [email protected] vdjviz1 The error 'The...
I am having issues running the vdjviz.bat script in Windows. Error message is The input line is too long. The syntax of the command is incorrect. even though I am...
Hello, Seems latest commit for vdjviz was Oct,2016. Is there any plan of releasing a new version? I tried to install the stand-alone vdjviz on Mac & windows, but there...
Hi, I converted mixcr input to vdjtools and tried uploading to browser but there is some parsing error. Basically I did: java -jar vdjtools-1.1.4/vdjtools-1.1.4.jar Convert -S MiXCR ${sample} convert then...
Force compute rarefaction curves each time sample list has changed and user invokes rarefaction tab? #31
In case anyone spots it: http://stackoverflow.com/questions/32126829/chrome-renders-strange-chord-shapes-in-d3-chord-diagram