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error when uploading clonotype file from mixcr4.2.0
Hi,
mixcr3.0.13 generates clonotype txt files with the following columns (cloneCount, cloneFraction, etc.):
cloneId cloneCount cloneFraction targetSequences targetQualities allVHitsWithScore allDHitsWithScore allJHitsWithScore allCHitsWithScore allVAlignments allDAlignments allJAlignments allCAlignments nSeqFR1 minQualFR1 nSeqCDR1 minQualCDR1 nSeqFR2 minQualFR2 nSeqCDR2 minQualCDR2 nSeqFR3 minQualFR3 nSeqCDR3 minQualCDR3 nSeqFR4 minQualFR4 aaSeqFR1 aaSeqCDR1 aaSeqFR2 aaSeqCDR2 aaSeqFR3 aaSeqCDR3 aaSeqFR4 refPoints
0 1091 0.0050558882 TGTGCTTGTCAAGCTCATTTACTCACGGGAGGAGGAAACAAACTCACCTTT [[[[[[[[[[[[[[[[[[[[[[[[[[[[[[[[[[[[[[[[[[[[[[[[[[[ TRAV38-2DV8*00(811.6) TRAJ10*00(314.4) TRAC*00(89.6) 433|440|469|0|7||35.0 21|53|84|19|51||160.0 TGTGCTTGTCAAGCTCATTTACTCACGGGAGGAGGAAACAAACTCACCTTT 58 CACQAHLLTGGGNKLTF :::::::::0:-9:7:::::19:-1:51:::
mixcr4.2.0 generates clonotype tsv files with the following columns (readCount, readFraction, etc.):
cloneId readCount readFraction uniqueMoleculeCount uniqueMoleculeFraction targetSequences targetQualities allVHitsWithScore allDHitsWithScore allJHitsWithScore allCHitsWithScore allVAlignments allDAlignments allJAlignments allCAlignments nSeqCDR3 minQualCDR3 aaSeqCDR3 refPoints
0 14506 0.0025839094 283 0.0025100446 TGTGCTCTGAGTGAGGTAAACGACTACAAGCTCAGCTTT NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN TRAV19*00(825.4) TRAJ20*00(259.3) TRAC*00(89.7) 432|448|469|0|16||80.0 25|46|77|18|39||105.0 TGTGCTCTGAGTGAGGTAAACGACTACAAGCTCAGCTTT 45 CALSEVNDYKLSF :::::::::0:-1:16:::::18:-5:39:::
it seems it does not allow to upload mixcr4 clonotype files in VDJViz