Anita Caron
Anita Caron
Then I need to update the documentation.
> Does it mean the file metrics we report in the dashboard all use the whole ontology? Yes, only in cases where the base was generated.
The simple solution would be to change the order of the chain. 1. merge 2. remove (create the base file if `make_base` is true) 3. measure 4. merge
#gogoeditdiff
In the dashboard, we consider the base artefact, which doesn't have any axiom from RO. If it is not available, we generate one from the full.
It had many changes after @matentzn had approved. It might need to be checked again.
I've checked the code, and ideally, the axioms for TAXRANK should be sourced from http://purl.obolibrary.org/obo/taxrank.owl. It seems there's still missing some ranks: ``` Summary of unrecognized ranks: Counter({'realm': 7, 'domain':...
Here's the documentation specific to CL https://obophenotype.github.io/cell-ontology/Adding_classes_from_another_ontology/
It would be better to obsolete the term UBERON:3010146 and add the replaced_by annotation to UBERON:0001680. @aleixpuigb, can you comment here, please?
What is your complete YAML file?