Andrew Su
Andrew Su
primary issue: https://github.com/biothings/myvariant.info/issues/66 but the data file(s) also contains gene associations...
https://www.ebi.ac.uk/gwas/docs/file-downloads See also https://github.com/biothings/myvariant.info/issues/65
https://orcs.thebiogrid.org/ could be a really great resource to load as a way to link genes to cell types or cell lines. this is also in the gene wiki / wikidata...
http://mygene.info/v3/gene/ENSG00000123374.10 and http://mygene.info/v3/query?q=ENSG00000123374.10 return no hits, while http://mygene.info/v3/gene/ENSG00000123374 and http://mygene.info/v3/query?q=ENSG00000123374 return the expected result. Most people will not be searching versioned accession numbers (I don't think), but if this is...
CellMarker: a manually curated resource of cell markers in human and mouse Publication: https://academic.oup.com/nar/advance-article/doi/10.1093/nar/gky900/5115823 Download page: http://biocc.hrbmu.edu.cn/CellMarker/download.jsp Head of human file: ``` speciesType tissueType2 cancerType cellType cellName3 cellMarker geneSymbol geneID...
drug-gene interaction database downloads page: http://www.dgidb.org/downloads see also https://github.com/biothings/mychem.info/issues/38
I was expecting to find a link to the [mygene bioconductor package]( https://www.bioconductor.org/packages/release/bioc/html/mygene.html) from somewhere in [mygene.info documentation](http://docs.mygene.info/en/v3/index.html), but wasn't able to find it. (also, I don't think the official...
I believe we have scoring in place to prioritize human, mouse, and rat over other species, and that seems to be working well: https://mygene.info/v3/query?q=BRCA2 But scoring with wildcard searches is...
Many APIs haven't been updated since first creation. For example, https://biothings.ncats.io/go_bp, https://biothings.ncats.io/go_cc, and https://biothings.ncats.io/go_mf haven't been updated since 2020. We should try to systematically go through our existing APIs and...
In https://github.com/biolink/biolink-model/blob/master/biolink-model.yaml#L6678C17-L6678C17, `STY:122` (the UMLS semantic type for "Biomedical or Dental Material", abbreviation "bodm") is mapped to `biolink:device`. I just want to ask that someone take a second look at...